Archive for category Grg’s Reference

My feet are my new ass.

Using the universal rule of New Guy privilege, I managed to finagle my way into getting the facilities folks to purchase a standing computer desk for me.

I’ve been thinking about doing this for some time now, ever since I first heard that Donald Rumsfeld used one, not that I plan to model myself off of Rumsfeld. The truth is, my job involves a lot of staring at the computer, which is a lot like most jobs nowadays. Unless I’m off to meetings, where I then sit, I’m not moving around much at all during the workday. Add the fact that I’m no longer biking into the office, and this means more expandable-waist khakis in the near future.

Of course, the danger here is that, as the new guy, everyone will think I’m nuts, no matter how many times I send around links to stories about the benefits of standing desks. But people have questioned my sanity in the past. I’m not terribly worried.

I explain it to folks this way, not only is standing healthier for you, people tend to think better on their feet. I have always stood while making phone calls, it is just easier for me to think that way…and yes, I tend to wave my arms a bit. After a few hours in a chair, I begin to feel tired, dull and stupid. That’s just how it is. For me at least.

Already I have found that typing is just as comfortable while standing. I’ve also taken off my shoes so that I can bounce on the balls of my feet when I feel the need to stretch a bit. Of course, this means I’ll have to be more attentive to the holes in my socks…and I probably should buy an air freshener…

The desk in question is by Safco (here), and it was entirely up to the facilities people. There was discussion of building a shelf or an adjustable arm, but a new desk was likely the best solution.

Truth be told, it wobbles a bit when I start typing, which is due, in part, to the inherent bounciness of keyboard trays. They facilities folks will be screwing it to a cleat in the wall for more stability, but I have a feeling I’ll need to take the keyboard off the tray and a put it in front of the iMac for comfort as well.

Here’s a picture of the setup from earlier this morning:

I think I’m going to need to put together a little arm or shelf to hold my phone.

Next, of course, is installing a treadmill.

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Purely for my reference — tips for cleaning up Linux

Here’s a handy-dandy list of things to do to save some hard drive space on yer Linux box. If you’re like me, and have a very, very tiny hard drive (hey, it ain’t the size, its what you do with it that counts), then this could be useful for you.

Of course, the beauty of mucking about on my little netbook is that my boot USB drive makes all mistakes forgivable…provided I remember to save my documents on the SD card.

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Flacks exaggerate importance of medical research

I missed this earlier and, at the risk of getting myself into trouble, I’d like to say a few words. Ben Goldacre in The Guardian turned his eye toward a recent study about the quality of press releases from major American medical research centers. Having worked in at least one top research institute probably referenced in the study, I’m not terribly shocked.

Sometimes I think it you are less likely to see an exaggeration in a corporate release about a clinical trial than in an academic press release. The corporate flack is beholden to a separate set of rules much stricter than those seen in non-profit academic centers. (In general, however, they overcompensate their bland, corporate releases by being complete PsITAs when it comes to pitching their stories. What isn’t generally well known is how hard they try leaning on academic flacks to do their dirty work for them. In my experience, at least. )

According to Goldacre, among the chief flack crimes is not correctly depicting the size and quality of the research described. I know from experience that some press release editors frown on including such materials, assuming that good journalists would follow up and actually read the study and speak to the reporters. That might have been a safe assumption at one point, but no longer, since many press releases get picked up and used online (and often in print) verbatim.

Researchers at Dartmouth Medical School in New Hampshire took one year’s worth of press releases from 10 medical research centres {The Annals tipsheet, quoted below, mentions 20, hmmm… –Greg}, a mixture of the most eminent universities and the most humble, as measured by their US News & World Report ranking. These centres each put out around one press release a week, so 200 were selected at random and analysed in detail.

Half of them covered research done in humans, and as an early clue to their quality, 23% didn’t bother to mention the number of participants – it’s hard to imagine anything more basic – and 34% failed to quantify their results. But what kinds of study were covered? In medical research we talk about the “hierarchies of evidence”, ranked by quality and type. Systematic reviews of randomised trials are the most reliable: because they ensure that conclusions are based on all of the information, rather than just some of it; and because – when conducted properly – they are the least vulnerable to bias.

He is absolutely right of course, depicting the quality of the study is every bit as important as spelling the lead researchers name correctly. (To be totally honest, I’ve probably failed on both accounts in the course of the hundreds of clinical science releases I’ve written.) And I couldn’t imagine writing a release that didn’t report the number of people in a study. However, it is entirely appropriate for such information to be placed further down in the release. Not buried, mind you, along with the boilerplate and the acknowledgments-you-know-people-won’t-read-but-you-add-anyway-to-appease-the-scientist’s-collaborators. It is also very tricky to explain studies in terms lay audiences might understand without including a few extra paragraphs explaining what a P value means. Again, there is a middle ground, but it behooves flacks to mention the statistical significance of the study they’re promoting. Even a small study with few people can be significant, a fact lost on most folks, flacks especially.

Probably a bigger crime, one that Goldacre doesn’t address directly and is probably not part of the study, is the inability to distinguish between animal and human trials. Many institutions shy away from mentioning animal models as a rule, since people often react angrily — even violently — to the shocking news that you may be working on lab rats. In the past, I’ve used the term “animal model” instead of specifying rat or mouse, which were usually the animal involved. If the study involved a primate, I would have to say something and risk the reaction.

I haven’t read the Dartmouth study myself, but it doesn’t appear that the sin of omission isn’t the only source of exaggeration noted in releases. Here is how the Annals of Internal Medicine’s press tipsheet summarized it:

The news media is often criticized for exaggerating science stories and deliberately sensationalizing the news. However, researchers argue that sensationalism may begin with the journalists’ sources. The researchers reviewed 200 press releases from 20 academic medical centers. They concluded that academic press releases often promote research with uncertain relevance to human health without acknowledging important cautions or limitations. However, since the researchers did not analyze news coverage stemming from the press releases, they could not directly link problems with press releases with exaggerated or sensational reporting. The study authors suggest that academic centers issue fewer releases about preliminary research, especially unpublished scientific meeting presentations. By issuing fewer press releases, academic centers could help reduce the chance that journalists and the public are misled about the importance or implications of medical research.

The problem is that the act of sending out a press release fundamentally risks exaggeration by calling attention to something. Even if you are perfectly clear that the study is small and adds but an incremental bit of information to the larger scientific world, the very fact you are writing a release is calling attention to it. And, of course, you can write the least sensational press release in the world and still have it taken out of context by a reporter looking for lurid headlines.

I’d also like to know what the researchers consider cautions or limitations. According to the Goldacre piece, 58% of releases lack these sorts of things. That’s a fairly high number that, doing the gut check, might be a matter of perspective. Would an un-read disclaimer — in the “forward-looking views”-sense — be viewed as proper caution? Were some releases entirely “cautious” while others not so complete in their cautioning?

So, should institutions send out fewer releases? Some, perhaps, but that’s a superficial answer. I know some places that have instituted a quota system on public relations people and use press releases as a measure of productivity. I think that is a poor practice that practically guarantees shoddy releases, of course. Then again, I’ve worked in places where I would have sent out twice the amount of news releases if I had the time, because the science there was just that plentiful and interesting. It isn’t all that cut and dry.

Press officers are always told to look for clinical relevance in basic science stories. They are told that journalists won’t write about it otherwise. This has a certain bit of truth to it, of course. The journalist you pitch must often, in turn, pitch an editor, who will generally ask about “the point of it all.” The horror.

The majority of biomedical press releases I have written have been about laboratory results. Basic science stuff, molecules bopping into each other, and all. And here you must work hard not to exaggerate the potential clinical use of those findings. Releases like these are often written with the trade press in mind as often — if not more often — than the popular press.

Why? Because, when done well, it helps establish researchers and their institutions as productive and interesting. Because basic science does, in fact, lead to advanced medicine. Because the noise beats signal out there and someone must shepherd the good science around the din.

Still, it is up to the press officer to be an advocate for their institution as well as responsibly advocate the science. That’s where it helps to find a useful story angle to pitch…which, when done thoughtlessly, inevitably leads to the use of the words “holy grail” or, worse, a reference to Star Trek. The trick is to pitch the story behind the science as well as the science itself in order to find the relevance, a feat that is far easier said than done.

With fewer science reporters out there it has become — for better or worse — incumbent upon public affairs people (PIOs, Flacks) to tell the story right the first time.

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Why I don’t go into the water…Reason #1,768

I could not be in the same ocean as this creature and not be gripped by paralyzing fear (not to mention paralyzing tentacles!). Behold, a great big jelly, the likes of which are not meant to be seen.

As the Discovery News reports, monster jellyfish like this are becoming more common as fish populations dwindle.

They say climate change could also cause jellyfish populations to grow. The team believes that for the first time, water conditions could lead to what they call a “jellyfish stable state,” in which jellyfish rule the oceans.

The combination of overfishing and high levels of nutrients in the water has been linked to jellyfish blooms. Nitrogen and phosphorous in run-off cause red phytoplankton blooms, which create low-oxygen dead zones where jellyfish survive, but fish can’t, researchers said.

Just great. We’re doomed.

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Kim Stanley Robinson’s Top 10 Mars Novels

Personally, I abhor top 10 lists as gimmicky click bait (for shame Newsweek, that trick works for Cracked, but it is unseemly for you), but I’ll forgive IEEE Spectrum for this list of Kim Stanley Robinson favorite Mars-related SF novels. There are at least three novels on this list I’ve never heard of, let alone read. Hunting them down might be a challenge.

I’m still in awe of Robinson, and deeply regret not being able to string two sentences together when I met him while interning at NSF.

He is in the top two of the all-time list of great SF writers named Robinson.

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Why I don’t go into the water Britain …Reason #1,767

The Telegraph reports finding a 600ft jellyfish crop circle found in an Oxfordshire field.

Kill it!!! Oh, wait…

At the end of the article, the writer oddly refers to an entirely different crop circle from last year, and reuses the quotes from a retired astrophysicist on how THAT crop circle encodes pi.

I had to re-read it to figure out the this reference really had nothing to do with the jellyfish. Bizarre.

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ABC’s of Scatman Crothers

I posted this on Facebook, scatmanbut I amused myself enough to share here too:

I’ve been tagged, and I am supposed to write a note with the ABC’s of me. I’m not feeling all touchy-feely open at the moment, so I decided to write about someone I barely remember, Benjamin Sherman “Scatman” Crothers, who would be 99 this Saturday.

If I tagged you, it’s because I want you to know more about Scatman Crothers – but not in a creepy stalker kind of way. Mostly.

A- is for Axe, you didn’t see that coming.

B – is for Benjamin, you got your start by drumming

C – is for Capone, you sang for him in Chicago

D – is for Dead, which you sorta kinda are now.

E – is for Entertaining, although your parts were often crummy

F – is for Foxx, as in Redd, who never called YOU big dummy

G – is for your cover of Ghost Riders in the Sky: http://www.youtube.com/watch?v=xBYAis7akKw

H – is for Hong Kong Phooey, a number one super guy

I – is for Instruments, including your unique voice

J – is Jazz the Autobot, an odd acting choice

K – is for Kick the Can, you’re only as old as you feel

L – is for Long, we heard its like a conger eel

M – is for “A Man’s Gotta Eat,” a song I never heard

N – is for Narcolepsy, a random sleepy kind of word

O – is for “One Flew Over The Cuckoo’s Nest,” your other film with Jack

P – is for Pate, as bald as a worn out thumb tack

Q – is for Qantas, the name of an Australian airline

R – is for Random, like the word in the above line

S – is for Scat, which you were known for, but not really the best

T – is for Time, I got none, so I’m gonna scat the next

U – is for ubi, doobie dippo dee

V – is for vappa donna doo-ah debba see

W – is for Women, like that Afro-babe above your bed

X – is for Xenograph, like adding a second head

Y – is for Years gone by, as sweet as cream de cacao

Z – is for Zapped! in which you starred with Scott Baio

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John Holdren’s first interview

Good stuff to know if you are interested in the course of science under the Obama administration at ScienceInsider.

This is the first I’ve heard about asking the Chinese to shuttle our astronauts to space. I wonder where this came from…or if Holdren was just speaking off the top of his head. But why the Chinese when we have a number of home grown outfits, like SpaceX, looking to do the job? Why the Chinese over the Russians, who are particularly good at getting people safely to orbit?

The other question I have is about nukes. I don’t believe we necessarily need new nuclear weapons, but is that the job of the science advisor to decide and not, say, the military? Of course, as Holdren points out, our national labs have a broad research portfolio, not just nukes.

But that’s just one bit of the interview, its fairly in-depth and well worth the read.

And, in other Holdren news, AP is reporting that he has an interest in geoengineering .

I’m a little nervous about fiddling with the global climate, especially before we know exactly how everything plays out. What if we make matters worse? Why not wait until the damage is done? I don’t believe in irreversibility, that just doesn’t make sense…not on a geological scale, at least, but maybe that’s only irreversible on a human scale.

Here’s my plan, millions of acres of space solar panels. We’ll block out a fraction of the sunlight reaching Earth and generate safe, clean power. Sure, you say, we’d never be able to build the x gazillion solar panels we’d need to block the sun. Maybe they don’t have to all be solar panels, maybe its just a few gazillion acres of some sort of dimming fabric…in addition to the solar panels. Think of all the stimulus money that could be spent on the solar/space industry!

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Warner Bros. opens the archives for rarely-seen Doc Savage, Capt. Nemo and Sindbad the Sailor

This is kind of neat, Warner Bros. is putting their old, rare and neglected films for sale online. Unfortunately, its DVD and not on-demand…and they all seem to cost about $20, which is a bit high for what was once late-night TV or UHF fare.

It includes this gem of a turkey, George Pal’s Doc Savage: The Man of Bronze.

And, yes, Doc Savage had a Fortress of Solitude long before Superman.

I’m a big Doc Savage fan — and George Pal, for that matter — but this one is a turd. Its played for camp, but in that 60s-70s elbow poke in the ribs sort of way. Fui.

There are a couple of films in the archive that I’m interested in checking out, including a Captain Nemo flick starring Chuck Conners Captain Nemo and the Underwater Citym and a Harryhausen-free (and thankfully, Sinbad-free) Captain Sindbad.

They don’t look bad, but I couldn’t say that they’re worth $20.

Speaking of Sindbad, who’s that most remarkable extraordinary fellow?

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Its a small laptop, after all…

I’m just getting used to my new Dell mini 9. First impressions are good.

It isn’t for the feint of heart, I tried one out before I went to the Dell outlet site and managed to get one refurbished (and less than $200!). The keyboard is tiny, but passable. The only real problem I have is with the misplaced quotation marks button. I also tend to swipe the touchpad by accident, which can be annoying. I’ll end up just using a mouse, I think.

Web browsing is fine, but since space is at a premium, I won’t be collecting my links on their own toolbar.

Not a bad little machine, overall. Certainly a lot lighter than the macbook. It should be a breeze for travel, but I’m not replacing my work desktop or my home laptop.

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